I found Root.Master in MasterPages folder has the markup for adsense. So I was able to do what I wanted by fiddling with the file and styles.css.
More specifically, at default google ad was located at the end of page but I wanted to put the ad in the header just below header links. So I moved following line from Root.Master
in Header.ascx for GoogleAdsense to be recognized in the file.
By adjusting width of header-links-wrapper in styles.css, I was able to achieve the goal. Best part is that I could do this without compiling anything.
Hope it helps other people too.
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