Not sure what happened during upgrade but noticed after moving from NOP 3.8 to 3.9 there are quite a few items in the admin console that were duplicated. Here are a few instances..
Message Templates - Each template is duplicated
Configuration > Countries - Each country is duplicated
Configuration > Currencies - Each currency is duplicated
There may or may not be more items, just thought it was strange. Searching the forum I don't see anyone else with this issue, so I'm sure its just something on my end that was wonky. The product catalog seems to be correct.